Protein Info for Dsui_0739 in Dechlorosoma suillum PS

Annotation: Major Facilitator Superfamily transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 513 transmembrane" amino acids 17 to 37 (21 residues), see Phobius details amino acids 49 to 66 (18 residues), see Phobius details amino acids 87 to 106 (20 residues), see Phobius details amino acids 113 to 133 (21 residues), see Phobius details amino acids 154 to 174 (21 residues), see Phobius details amino acids 180 to 200 (21 residues), see Phobius details amino acids 219 to 240 (22 residues), see Phobius details amino acids 252 to 273 (22 residues), see Phobius details amino acids 285 to 305 (21 residues), see Phobius details amino acids 335 to 354 (20 residues), see Phobius details amino acids 363 to 387 (25 residues), see Phobius details amino acids 410 to 435 (26 residues), see Phobius details amino acids 445 to 464 (20 residues), see Phobius details amino acids 473 to 494 (22 residues), see Phobius details PF13000: Acatn" amino acids 22 to 104 (83 residues), 38.6 bits, see alignment E=5.3e-14 PF07690: MFS_1" amino acids 23 to 399 (377 residues), 40.1 bits, see alignment E=2.3e-14

Best Hits

KEGG orthology group: K08218, MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG (inferred from 84% identity to tmz:Tmz1t_4070)

Predicted SEED Role

"AmpG permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QH56 at UniProt or InterPro

Protein Sequence (513 amino acids)

>Dsui_0739 Major Facilitator Superfamily transporter (Dechlorosoma suillum PS)
MAEAAVLSAGARLGRAWRLAAILVLGFASGLPLALTGQAMQAWLTVDGIDLATIGFFGLV
GIPYTFKFLWAPLMDRFEPPFLGRRRGWLVLTQLALGGLLWLMSGLSPATAPQLFALAAL
AVAFLAASQDVVVDAYRTDLLPEAERGLGASVHVFAYRLAMILSGGISLIWAGQWQSWPR
VYAVMAAIMVGCAAFSLLAVPRVSSANKPLASDPKKELLGFAAMLAGVVAGYVVARQALV
VLGLNPDDANKWVQLLFVLAEIAAALPLAWWCSRKAGFETLNQSLASYFAQSGAGAFLLL
IVLYKLGDAFAGSLTTPFLIKGMGFLQEEVGIANKVIGIWLTILGAFIGGLIMTRLALYR
SLLFFGVLQLVSNFGFYLLALLGKGAWGAVMVPAFDWGIVSLHTPASLDWLLLTVIAGEN
ISGGMGTVAFVALLMGLCNHRFSATHYALLSAFAAVGRIYVSPLSGVLSESIGWPAFFLF
SILVAVPGVFMVWWMRRPLQALGAPASAGAADD