Protein Info for Dsui_0708 in Dechlorosoma suillum PS

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 697 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 30 to 49 (20 residues), see Phobius details amino acids 53 to 55 (3 residues), see Phobius details amino acids 57 to 81 (25 residues), see Phobius details amino acids 88 to 111 (24 residues), see Phobius details amino acids 131 to 156 (26 residues), see Phobius details amino acids 171 to 191 (21 residues), see Phobius details amino acids 203 to 222 (20 residues), see Phobius details amino acids 228 to 245 (18 residues), see Phobius details amino acids 252 to 274 (23 residues), see Phobius details amino acids 284 to 303 (20 residues), see Phobius details PF05231: MASE1" amino acids 30 to 308 (279 residues), 96.4 bits, see alignment E=5.6e-31 TIGR00229: PAS domain S-box protein" amino acids 317 to 438 (122 residues), 44.3 bits, see alignment E=9.2e-16 amino acids 442 to 569 (128 residues), 34.3 bits, see alignment E=1.1e-12 amino acids 567 to 686 (120 residues), 55.2 bits, see alignment E=4e-19 PF00989: PAS" amino acids 319 to 429 (111 residues), 28.1 bits, see alignment E=5.1e-10 amino acids 574 to 680 (107 residues), 50.8 bits, see alignment E=4.9e-17 PF08447: PAS_3" amino acids 344 to 426 (83 residues), 43.5 bits, see alignment E=9.3e-15 amino acids 479 to 555 (77 residues), 51.1 bits, see alignment E=4.1e-17 amino acids 594 to 677 (84 residues), 34.6 bits, see alignment E=5.7e-12 PF08448: PAS_4" amino acids 577 to 685 (109 residues), 40.8 bits, see alignment E=7.2e-14 PF13426: PAS_9" amino acids 582 to 683 (102 residues), 55.5 bits, see alignment E=1.8e-18

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QH25 at UniProt or InterPro

Protein Sequence (697 amino acids)

>Dsui_0708 PAS domain S-box (Dechlorosoma suillum PS)
MAQIMLKRLLAPPAAAPLPAARLPLLPGLLLVFAAYLAVAQLTMAIGTAGHGLFVPFWPP
AGIALAALVLGGGRLWPAVLLATLGSALISGFAPLTGLLMGAGNALGAWAGYRLLRGPLQ
FDPRLGRPQDVLHLCFSAPVLGGAISASLGVGALSLGGSLEPAQLLPAWRGWWVGDLAGT
QLLAPLLLAWLQPREGLDQGRWRHLAVAAVVAAALSSLWFFSERAPESFAYAGLLLLLTL
IWIAFSCELRLVTLALATTALTAAVFAALGTGPFANIEPQLVQVKLQVLIASLTAVTLAL
AAANRQRRSAEEDRNRAEERLEQVLDSLDDVIWTLEAEERRFSFVSGATQRLSGHSAAEL
YANAMRWADDLHPADRETTLAAFERQFAGEAADQEFRIIRDGEVRWLRVRSHPVVVAERV
VRIHGITQDVTSLHRAMDRLAASEERLRRALGASEVGVWDWAVETGNLQFVLAVADGNGY
RLAERSVGLAEWEASLHPEDRARAMQALLDCRDGRSLRFRCEYRTHTRHGHWRWFRGEGQ
VVGSADGQARHLAGTFRDIHERKQVEAELEKLSMAVEQNPSVVFITDAQGRFEYCNQAFS
EVTGYGLEDILEQTPRLLKSGLNEVGTYADLWRTINAGKTWRGRLLNRRRDGSIYVCLQA
IAPIRDANGRITHFVSISQDLSELQESPDLWPPRRRS