Protein Info for Dsui_0663 in Dechlorosoma suillum PS
Annotation: thiamine-phosphate pyrophosphorylase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 62% identical to THIE_DECAR: Thiamine-phosphate synthase (thiE) from Dechloromonas aromatica (strain RCB)
KEGG orthology group: K00788, thiamine-phosphate pyrophosphorylase [EC: 2.5.1.3] (inferred from 62% identity to dar:Daro_3901)Predicted SEED Role
"Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)" in subsystem Thiamin biosynthesis (EC 2.5.1.3)
MetaCyc Pathways
- thiamine diphosphate biosynthesis I (E. coli) (2/2 steps found)
- thiamine diphosphate biosynthesis II (Bacillus) (2/2 steps found)
- thiamine diphosphate salvage II (4/5 steps found)
- superpathway of thiamine diphosphate biosynthesis II (8/11 steps found)
- thiamine diphosphate salvage V (2/3 steps found)
- superpathway of thiamine diphosphate biosynthesis I (7/10 steps found)
- thiamine diphosphate biosynthesis III (Staphylococcus) (1/3 steps found)
- thiamine diphosphate biosynthesis IV (eukaryotes) (1/3 steps found)
- superpathway of thiamine diphosphate biosynthesis III (eukaryotes) (3/7 steps found)
- thiamine diphosphate salvage IV (yeast) (3/7 steps found)
- thiamine diphosphate formation from pyrithiamine and oxythiamine (yeast) (3/8 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 2.5.1.3
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See G8QGJ4 at UniProt or InterPro
Protein Sequence (215 amino acids)
>Dsui_0663 thiamine-phosphate pyrophosphorylase (Dechlorosoma suillum PS) MLKRPRPGLYAVTPDGLETPRLLMLAEAALAAGIPLLQYRDKSGDDARRREQATALLALC RRHGTRLIINDDAALAREVDADGVHLGGEDGDLAAARALLGPDKLIGASCYADFARAQAA AAGANYVAFGAMYASPTKPQAPRAPFNLVTRARQELPGVQVAAIGGITLDNAAPVIAAGA QFVAVITDLFEAPDVTARAAAYQRLFAESAAHELS