Protein Info for Dsui_0616 in Dechlorosoma suillum PS
Annotation: ABC-type antimicrobial peptide transport system, ATPase component
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 42% identical to LOLD1_RHOPA: Lipoprotein-releasing system ATP-binding protein LolD 1 (lolD1) from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
KEGG orthology group: K02003, (no description) (inferred from 76% identity to dar:Daro_1841)MetaCyc: 36% identical to ATP-binding cassette protein PhnL (Escherichia coli K-12 substr. MG1655)
Predicted SEED Role
"ABC transporter, ATP-binding protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See G8QG05 at UniProt or InterPro
Protein Sequence (224 amino acids)
>Dsui_0616 ABC-type antimicrobial peptide transport system, ATPase component (Dechlorosoma suillum PS) MIQLTDIHKAFNQGQHNEYWALSGIDLELEARRVTAFQGPSGSGKTSLLTIVGCLARPTR GRVRLHGEDISGLPERFLTEIRRRTFGFVFQQFNLIRGLSALDNVMLPAYPEGKPHAELL QRAETLLARLQLGHRRHARVEWLSGGEQQRVAIARALINDPEVIIADEPTANLDTTLSKQ FLAILEELSGEGRTVLLTSHDPLVIKSSAVHRVVGLRDGRLCGD