Protein Info for Dsui_0615 in Dechlorosoma suillum PS
Annotation: ABC-type transport system, involved in lipoprotein release, permease component
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 74% identity to dar:Daro_1842)Predicted SEED Role
"ABC transporter, permease protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See G8QG04 at UniProt or InterPro
Protein Sequence (378 amino acids)
>Dsui_0615 ABC-type transport system, involved in lipoprotein release, permease component (Dechlorosoma suillum PS) MRPWIEKQRYLIDYTLAALARRKARNLGLLAVYALLVFMLASVSLFGQALRQEAAAVLAD SPEVILQRLVAGRHDLIPPGYLEKIGRIRGVQHQQGRLWGYYYDPVSKANYTLLVPAADA PAPGHLRLGATLARERGLQAGQPLSLRSYGGKLFTFTVDEVLPASSELISADLVLLGEAD FRAFFDYPAGHYTDIALSVANPKEVRNVAAKLSAALPDARPILREEMRRTYASLLDWREG IALALLAAALLAFAILAWEKASGLSADERREIGILKAIGWETGDVLRMKLWEGLLISFSA FLLGLVGAYVHVFHFGARLFEPVLKGWAVLYPRFTLVPQLDGLQLFTLFFFTVVPYTAAV LVPIWRAAIIDPDAAMRG