Protein Info for Dsui_0611 in Dechlorosoma suillum PS

Annotation: phosphotransferase system cellobiose-specific component IIC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 695 transmembrane" amino acids 18 to 37 (20 residues), see Phobius details amino acids 57 to 81 (25 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 124 to 147 (24 residues), see Phobius details amino acids 168 to 192 (25 residues), see Phobius details amino acids 212 to 231 (20 residues), see Phobius details amino acids 242 to 249 (8 residues), see Phobius details amino acids 262 to 284 (23 residues), see Phobius details amino acids 301 to 350 (50 residues), see Phobius details amino acids 369 to 391 (23 residues), see Phobius details PF02378: PTS_EIIC" amino acids 17 to 330 (314 residues), 52.4 bits, see alignment E=4.6e-18 PF00563: EAL" amino acids 441 to 673 (233 residues), 208.2 bits, see alignment E=1.3e-65

Best Hits

Predicted SEED Role

"PTS system, cellobiose-specific IIC component (EC 2.7.1.69)" in subsystem Beta-Glucoside Metabolism (EC 2.7.1.69)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.69

Use Curated BLAST to search for 2.7.1.69

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QG00 at UniProt or InterPro

Protein Sequence (695 amino acids)

>Dsui_0611 phosphotransferase system cellobiose-specific component IIC (Dechlorosoma suillum PS)
MTSQLSRRARIWIYSIRDAFVSLIPLTLFGVLAVLARNFPLPAFQQFLLGGSGQAFSGIL
DLIIGGTHGVFGLSLAVVVAIHLRQRLPVGQPLDDGPSIMAVGLSSLINFMLATLAIFQH
HGGLGYDLMLVGIGVGLFSAEFMRWAARRSWLTLISATRDADLAVHNALRLSVPTAVSGL
IVLAVASFLAALPTPQALFDGVAAGARESAHGHYLAITFVTLVNQLFWFVGIHGGHILDT
FGLDLFVAVPNLPGGYLVNRSLFDAFVLMGGSGATLGLLVAIYLQSRSGSLLKVARVATL
PAMFNINEMVLFGLPVVLSPLYLLPFVLTPVLLALLAVAAVSSGWLQLLPVSIPWTTPPF
LSGWLLTGSIKGVLLQALGLLLSIGIYWPFVRRAEARRLAREDRLFRRAAEVVLGNRPSK
TSTIRRLDEVGSISRRVLGLLREDVRHDRLLLHYQPKHDCRDRLLGFEALVRWPQAPHPS
VSPAMAVILAEEGRLINELGLWVFRHALAFKARLNQSGFAGLSLAINVSPLQLAHGDFAE
RIARLMAETPVQPAEIEIEITESQVMPDDPVIDSNIQALGRMGFKLAMDDFGMGHTSLLH
LRRFAIDVIKIDGSLTRDVLHSATNGDIIRAIAALGQARDIAIIAEFVETAAQKQALANL
GCHVFQGYYYSPPLAEADCLAYCRRQPDEAEVGAA