Protein Info for Dsui_0610 in Dechlorosoma suillum PS

Annotation: putative signal transduction protein containing EAL and modified HD-GYP domains

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 PF08668: HDOD" amino acids 196 to 289 (94 residues), 38.3 bits, see alignment E=5.3e-14

Best Hits

Predicted SEED Role

"Predicted signal transduction protein" in subsystem Flagellar motility

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QFZ9 at UniProt or InterPro

Protein Sequence (390 amino acids)

>Dsui_0610 putative signal transduction protein containing EAL and modified HD-GYP domains (Dechlorosoma suillum PS)
MPAEVFITRQPLVNRQSKIIATRLRLSFPAGVDPMPAAAEGLGALADVWPQGEKSVFVSS
GAPLSPELLNWEIPANATLEVHPFALTTGDGTLLGELKNRNPSLCLDFGEDAGEALASGL
HFRFIGFDVDAYTPAQMAALVAKTQQVGIPVAFNADTPQEFQACMDAGVSAAAGWFFKNL
TAPAGKTLNPSHAHIVRVLNLVRNNEDTGKIEAALKQDVALSYKLLRYINSVGFGLSCEI
QSFKHAVTILGYEKLNKWLSLLLVTASKDPMAPALMHTALTRARLMEALGHGVVDKSEYD
NLFITGAFSLLDHMLGVPMEQVLEAMHLPEPISEALLGRGGLYGPFLDIALACEDGDGTR
LIQQAGLLGLSAAQINKAQLEALSFADKME