Protein Info for Dsui_0593 in Dechlorosoma suillum PS

Annotation: putative transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 PF02622: DUF179" amino acids 15 to 173 (159 residues), 173 bits, see alignment E=2.2e-55

Best Hits

Swiss-Prot: 70% identical to Y3893_DECAR: UPF0301 protein Daro_3893 (Daro_3893) from Dechloromonas aromatica (strain RCB)

KEGG orthology group: K07735, putative transcriptional regulator (inferred from 70% identity to dar:Daro_3893)

Predicted SEED Role

"UPF0301 protein YqgE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QFY2 at UniProt or InterPro

Protein Sequence (186 amino acids)

>Dsui_0593 putative transcriptional regulator (Dechlorosoma suillum PS)
MDSVNLTDHFLIAMPAMDDPYFSRALVYVCEHNDQGALGIVVNKPLDMPLQDLFEKVDIP
LDAAGLNNLPVYFGGPVQTDRGFVLHRPVGQWQSTLAVNDEVGLTSSRDILVAMGRQGQP
SEVLVTLGYAGWGAGQLESELAQNGWLTVRADPSIVFSLPPEERLAAAMLALGIDFAHLA
EDAGHA