Protein Info for Dsui_0504 in Dechlorosoma suillum PS

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 53 to 70 (18 residues), see Phobius details amino acids 206 to 227 (22 residues), see Phobius details amino acids 233 to 252 (20 residues), see Phobius details PF01062: Bestrophin" amino acids 1 to 275 (275 residues), 270.9 bits, see alignment E=7e-85

Best Hits

KEGG orthology group: K08994, putative membrane protein (inferred from 55% identity to met:M446_0834)

Predicted SEED Role

"probable membrane protein STY1534"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QFA8 at UniProt or InterPro

Protein Sequence (301 amino acids)

>Dsui_0504 putative membrane protein (Dechlorosoma suillum PS)
MIVRERPSLLRLFFIWRGSVVPHVLPQIVFTTSFAVLITWGAQHFGHLFPDYSAAPFALL
GLAFSIFLGFRNSACYDRWWEARKQWGGLIVELRSLARDSLVLEAEPRRLLVRRSLAFAH
ALAARLRGRDAVLEAAPFLPPGEAERLAQSRNPADALLRQCGHDLVQARQRDGLGDIVYQ
GLTQRLHALSGIQAACERIRFTPLPFAYTLLLHRTAHLFCLLLPFGLARSVGWATPLLTA
VLAYTFFGLDALGDELEEPFGTLENDLPLDAMVRMLEGDLGEALGETDLPPLLQPQGYVL
L