Protein Info for Dsui_0497 in Dechlorosoma suillum PS

Annotation: TIGR00255 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 288 TIGR00255: TIGR00255 family protein" amino acids 1 to 288 (288 residues), 262.5 bits, see alignment E=3.1e-82 PF03755: YicC-like_N" amino acids 2 to 154 (153 residues), 140.7 bits, see alignment E=5.4e-45 PF08340: YicC-like_C" amino acids 174 to 288 (115 residues), 137.4 bits, see alignment E=2.5e-44

Best Hits

KEGG orthology group: None (inferred from 64% identity to dar:Daro_3848)

Predicted SEED Role

"Protein YicC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QFA1 at UniProt or InterPro

Protein Sequence (288 amino acids)

>Dsui_0497 TIGR00255 family protein (Dechlorosoma suillum PS)
MIYSMTGYAAKTREVAGGSLHLELRSVNSRFLDIHFRIVDDLRVLEPALREAITAKLARG
KVELRLNLVASQSQNRQLAINADLLTQLQALEGQVRQTLPNAAALSVAEVLRWPGMLGEP
EVDTAALHAAVQATLKEALDDFTASRAREGAKLAAMIQERVDKIRATVAAVAPLIPQAQA
AYQDKLKQRLVEALGSADDERVRQEVVLYATRIDVDEELSRLQAHLTEVERILKAGGNAG
KRLDFLMQELNREANTLGSKSVLSEVSKASMDLKLLIEQMREQIQNIE