Protein Info for Dsui_0331 in Dechlorosoma suillum PS

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 PF00072: Response_reg" amino acids 10 to 121 (112 residues), 95.4 bits, see alignment E=7.3e-31 TIGR00229: PAS domain S-box protein" amino acids 135 to 262 (128 residues), 107.5 bits, see alignment E=2.6e-35 PF00989: PAS" amino acids 140 to 252 (113 residues), 65.4 bits, see alignment E=1.4e-21 PF08448: PAS_4" amino acids 146 to 256 (111 residues), 40.6 bits, see alignment E=8e-14 PF13426: PAS_9" amino acids 150 to 254 (105 residues), 49.5 bits, see alignment E=1.3e-16 PF07228: SpoIIE" amino acids 322 to 511 (190 residues), 122.2 bits, see alignment E=7.9e-39

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QNF6 at UniProt or InterPro

Protein Sequence (512 amino acids)

>Dsui_0331 PAS domain S-box (Dechlorosoma suillum PS)
MTRKSPPLRILVADDSPSIRQILLALLGRQGHQVIAAEDGQQALDLFHRHQPDLLLLDIM
MPVLDGMEVARRIRAEKLDRWVPIIFLSALDRRENLVAGLEAGGDDFLAKPLDFALLDAR
IRSMHKALDLQRQARESYRQLKAISDNVLDAIVTIDVHGRILSCNQATERILGWRPEELR
GQNVNVLMPEPYHSRHNDYMRAYVEGGPPNVFGYGRERPALRKDGTVFPAELAVTEIRDG
SQRIFIGLLRDVTERKNAEMKLMENAAALQQYYDQAEEENQLAARLLDKQMLRPGLQDSH
VHYWLSAAKNFSGDVVAATRTPDGSLVALLADATGHGLTAAISTLPLLTVFYGMANRGLP
LESMVGEMNRHLKASLPTGHFVAANVVLLDPATGTGQAWCGGMPESLLLDGDGEVVRTFA
SRHLPFGILGTDEFEASIDTFPCTPGHQLMLYSDGFKEAEGKNGAQLGHAGLREILRGVP
PEQRLTALQQALAEHLAGSPAQDDISVLLLDC