Protein Info for Dsui_0329 in Dechlorosoma suillum PS

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 902 signal peptide" amino acids 21 to 25 (5 residues), see Phobius details transmembrane" amino acids 26 to 43 (18 residues), see Phobius details amino acids 324 to 343 (20 residues), see Phobius details PF03924: CHASE" amino acids 94 to 272 (179 residues), 173.1 bits, see alignment E=2e-54 PF08448: PAS_4" amino acids 372 to 477 (106 residues), 27.5 bits, see alignment E=1.1e-09 TIGR00229: PAS domain S-box protein" amino acids 488 to 624 (137 residues), 53.2 bits, see alignment E=1.6e-18 PF00989: PAS" amino acids 489 to 614 (126 residues), 35.7 bits, see alignment E=2.6e-12 PF13426: PAS_9" amino acids 499 to 616 (118 residues), 38.1 bits, see alignment E=5.7e-13 PF00512: HisKA" amino acids 656 to 724 (69 residues), 71.4 bits, see alignment 1.8e-23 PF02518: HATPase_c" amino acids 770 to 892 (123 residues), 83.1 bits, see alignment E=6.7e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QNF4 at UniProt or InterPro

Protein Sequence (902 amino acids)

>Dsui_0329 PAS domain S-box (Dechlorosoma suillum PS)
MSRSAHPSLPSRARRRLRRQPLPPRLTALVVLVVPMAMTLFSWQQLRHMEQQQASAAFSR
EASRVSAAMEERLNDYAQVLRGGSGFLHATPNPSHQAWHQFSEQLELSRKVPGMLVLGYL
PRVAAADLPAFTQRMREREGVTGFSVRPPGPRDEYYPVAFMAPEAPLRSAFGFDVASEPT
RREVLQAARDMGVVAMSGPIRLMADPEHASPSLLMVAPLYSTNGVPTIQEQRRQALQGYV
FTLFRVDEFVDSLSLSGSAQLNIRISDDSGGSSQIKHLYGASGSGPSNPLSEERSFYFGG
RSWQLHLESQDPPEQGPELPSSRILLFSGTAISMLLALLTLRLGSRRSFAEQLARRLSHE
WAEANSRLTGVFAALPDLMFELDRDRCFRHYHAPNEGELFVPPHSFLGRHPRDILPASLV
TQLEQCCDRIDAGVRLQIMEYQLPRHDGEIGEYEARITAIGEGGYLMVVRNVSEVRRTQQ
ALLQANARMKSVFDSATEVSIITTDTEGLITVFNRGAEKMLGYSAAAMVGQATPAILHLP
EEVEARAAELSREFGWKIQGFEVFVTRARLTGAERREWTYVRQDGSHLTVSLVVTAVYDE
AHNVTGFLGVAVDITALKTAEAELRRHRDHLQELVSERSADLLVAKEAAEYANHTKSEFL
ANMSHELRTPMHAILSFAGLGLSRAGSIPGAEKLNHYFQRIRESGERLLALVNDLLDLSK
LEAGKMSFEPRPVNLRPLIREAAGEMESLLQEKSLHLVLDERGPAEVYCDPLRFGQLIRN
LLSNAIKFSPVGGVIQVGFAPTTLSSGRRSGDRGNRSAVEMTVRDEGVGIPVDERELVFD
KFAQSSKTKTGAGGTGLGLAICREIALAHRGTIVARGNDGPGTCLAVTLPTPEASPSIED
RA