Protein Info for Dsui_0324 in Dechlorosoma suillum PS

Annotation: EDD domain protein, DegV family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 TIGR00762: EDD domain protein, DegV family" amino acids 3 to 306 (304 residues), 112.4 bits, see alignment E=1.2e-36 PF02645: DegV" amino acids 3 to 307 (305 residues), 162.7 bits, see alignment E=6.3e-52

Best Hits

Swiss-Prot: 48% identical to Y3508_XANAC: DegV domain-containing protein XAC3508 (XAC3508) from Xanthomonas axonopodis pv. citri (strain 306)

KEGG orthology group: None (inferred from 66% identity to dar:Daro_1546)

Predicted SEED Role

"DegV family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QNE9 at UniProt or InterPro

Protein Sequence (314 amino acids)

>Dsui_0324 EDD domain protein, DegV family (Dechlorosoma suillum PS)
MRIGIIVDSCCDLPRQFLDEHEIVVLPISLRIGGAVIQDRRDPDETHRFYATHVDRRSED
FAESFPYSPAQIEQVFLDKMVIDYDYVFVLTITSERSPIYDHAMQASRTVLTKYKDPRRE
IGKPGRFGLCVLSSRNLFTGQAVLAAEAVRLIRLGGTPSEIGTRLRQLVDHIHTYLVPAD
LFHIYKRAAKKGDSSINWGTYKLGQMLDMKPILHCNRDVTRSIAKVRGFEAGVQRLFANA
ARQVRAGLESPHVCISYGGDPATVPGLPGYADLAAAVQEKGAEILISMMSNTAAVNVGTG
AVSLAFAAGSHTFH