Protein Info for Dsui_0090 in Dechlorosoma suillum PS

Annotation: Sua5/YciO/YrdC/YwlC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family" amino acids 11 to 213 (203 residues), 188 bits, see alignment E=5.6e-60 PF01300: Sua5_yciO_yrdC" amino acids 22 to 202 (181 residues), 196.4 bits, see alignment E=2.9e-62 PF03481: Sua5_C" amino acids 204 to 331 (128 residues), 82.3 bits, see alignment E=4.8e-27

Best Hits

KEGG orthology group: K07566, putative translation factor (inferred from 70% identity to dar:Daro_0452)

Predicted SEED Role

"TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QLI4 at UniProt or InterPro

Protein Sequence (336 amino acids)

>Dsui_0090 Sua5/YciO/YrdC/YwlC family protein (Dechlorosoma suillum PS)
MQAAAISACPPSPADIDRAVQLLQAGELVGIPTETVYGLGADASNAEAVAKIFAAKGRPA
DHPLIVHLPGHDWIERWAADIPDAVWELAESFWPGPLTLILKKQPWVPDAVTGGQDTVGL
RVPGHPVALALLRAFAQAGGSGGVAAPSANRFGRISPTAAQHVADELGERVPFILDGGAC
PVGIESTIIDFSSGVPRLLRPGHITPEQIETVIGVRPEKPLGAVPRASGTLEAHYAPRTR
LKVVARERLLDFLNVVRHRGGFCGVICHSQPPHAGMPHVWKMLPADPAGYAHGFYGALRE
LDGAGADTIVVEALPEGPAWAAVADRLRRAAFGSGE