Protein Info for Dsui_0047 in Dechlorosoma suillum PS

Annotation: putative integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 transmembrane" amino acids 39 to 59 (21 residues), see Phobius details amino acids 65 to 87 (23 residues), see Phobius details amino acids 114 to 139 (26 residues), see Phobius details amino acids 165 to 190 (26 residues), see Phobius details amino acids 211 to 243 (33 residues), see Phobius details PF09955: DUF2189" amino acids 67 to 191 (125 residues), 105.6 bits, see alignment E=1.1e-34

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8QLE3 at UniProt or InterPro

Protein Sequence (256 amino acids)

>Dsui_0047 putative integral membrane protein (Dechlorosoma suillum PS)
MDILHSPVHHDLPRVRHVAWSRPFHWLAGGLRDLSRRPALSLSLGALFAIGGLCIFALAQ
GRPELLLAAVSGFLLVGPLLAVGFYEISRRIAGGDRLDAAAVAHSLAARWRPLALYGLFL
AAIYFIWAQLTTALVAYLLGSEWIWGFEELAREIFLSGRHPNLAAIWTLSGATLAAVTFL
LSVVTAPLLLDREVEVHHAMATSINVVATNLPAMLLWSFLIVSLTLFGFVTLMAGLVLIM
PLLGHATWHAYADLVE