Protein Info for CSW01_19120 in Vibrio cholerae E7946 ATCC 55056

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 239 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 56 to 73 (18 residues), see Phobius details amino acids 76 to 96 (21 residues), see Phobius details amino acids 110 to 127 (18 residues), see Phobius details amino acids 138 to 165 (28 residues), see Phobius details amino acids 171 to 189 (19 residues), see Phobius details amino acids 194 to 229 (36 residues), see Phobius details PF03591: AzlC" amino acids 27 to 165 (139 residues), 129.9 bits, see alignment E=4.4e-42

Best Hits

KEGG orthology group: None (inferred from 99% identity to vco:VC0395_0235)

Predicted SEED Role

"FIG006238: AzlC family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (239 amino acids)

>CSW01_19120 branched-chain amino acid ABC transporter permease (Vibrio cholerae E7946 ATCC 55056)
MNSQVLTIDDSPTPTRLFWQGTIAMLPLSIAVLPWGLLAGSFAIEAGLSVIESQALSAVL
YAGAAQLVAIGMFKTGAGLLSLLIATFFITSRHFLYSVSMRSKISPLPLRWRLTLGFLLT
DELFAICGAQSDKQFNRWYALGAGLSFYLIWNLASLVGIVAGSYLPDLNQWGLEFAVAAT
FIAIVIPNIKSWPVLISVLTALVLSVLLTVMGIEGSLMFASIGAMLAGYGTERLLGARP