Protein Info for CSW01_18080 in Vibrio cholerae E7946 ATCC 55056

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 815 transmembrane" amino acids 25 to 47 (23 residues), see Phobius details amino acids 254 to 278 (25 residues), see Phobius details amino acids 301 to 326 (26 residues), see Phobius details amino acids 348 to 371 (24 residues), see Phobius details amino acids 391 to 407 (17 residues), see Phobius details amino acids 413 to 438 (26 residues), see Phobius details amino acids 458 to 480 (23 residues), see Phobius details amino acids 690 to 715 (26 residues), see Phobius details amino acids 742 to 768 (27 residues), see Phobius details amino acids 780 to 802 (23 residues), see Phobius details PF12704: MacB_PCD" amino acids 31 to 227 (197 residues), 32.6 bits, see alignment E=9.9e-12 PF02687: FtsX" amino acids 259 to 373 (115 residues), 37.2 bits, see alignment E=2.7e-13 amino acids 696 to 802 (107 residues), 42.4 bits, see alignment E=6.6e-15

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to vcj:VCD_000541)

Predicted SEED Role

"FIG00809136: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (815 amino acids)

>CSW01_18080 ABC transporter permease (Vibrio cholerae E7946 ATCC 55056)
MKALPPASLNRRLLRWSLSEIRHGQLWPVTVALTLIIASIFALTALAQRMEQVIVKQGRD
ALTADTVFVSGNPLPESLLTLTAQQASQTSQMTRFATMAFSDQGMQLVTVKAVDSAYPLR
GEMRLSDGQQTFNHVASNQLWLEPRVKDQLGVDIGDNVTIGDADFVVSGEVLEEPGLSFN
PFQQMPSVYIHASDVDKTGAIQPGSRVQFSLFMTGDDSAIESIKQQVSLTASDRWRDQES
GSRTNEVFERTQQYLSLTVAIVILMAATTLVLTCQHYVSTRTHTIAMLKSLGASRRWLRR
WLALQVGLLLVFAVVLGSVIGVGLESLLRLPLKDLLPDPLPSYGLRPLWIALASSFLIAV
PALGIPLGRLLSVSAVAVMQPVTAQTRWQRNLLLIMVPIVPLLLVYWQNQLIWIVLIGIV
VLFAMLAVVSVLVTRLLAKLPLNPAMALALSRINRSGAASGLQFGALALSLMLLAIIWLV
RTDLLSDWQRTLPENAPNAFALNISESEKASYLAALDTASIERSAAYPIMRGRLTHINGQ
EAKQYAQNGEESSDALRRELNLTWAEQLPDYNPILQGEWQSQNGVSVEQEVASDLGLKLG
DTLTFMINSQTVSAQVNTIRQVEWREMKPNFYFIFSPDVVQNLPVSYLISFRIQPEHDAL
LGQLSRQHPTVSLMDIRTMGAKIQALLTQIVWSVTVLAALGVLAGVLLIFTLLRLSLSQR
QQEIRLYRTLGASRRRVMHTIWAEYGVMALVGGLVASVSADAVVAAVMKWGFSLTPSLHM
ALWFVLPALTFCTLAAVVSSLLKRLLAPVNKAFSD