Protein Info for CSW01_17710 in Vibrio cholerae E7946 ATCC 55056

Annotation: phosphoglycerate transport regulatory protein PgtC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF13531: SBP_bac_11" amino acids 48 to 291 (244 residues), 46.8 bits, see alignment E=3.3e-16 PF13343: SBP_bac_6" amino acids 88 to 306 (219 residues), 61.1 bits, see alignment E=1.2e-20

Best Hits

KEGG orthology group: K08478, phosphoglycerate transport regulatory protein PgtC (inferred from 100% identity to vcm:VCM66_A0664)

Predicted SEED Role

"Phosphoglycerate transport regulatory protein PgtC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (440 amino acids)

>CSW01_17710 phosphoglycerate transport regulatory protein PgtC (Vibrio cholerae E7946 ATCC 55056)
MNAQKLGICLMPRWIFAFIMPCLLLSLGVSTQAQAAERELVILTTFSREPLLPLVEEFSR
RYQGIEVQIIHRRAQSSVQLLNKSYIQNIDLVLSSSPYLMQNLAQSGKLAALPEPMQTPE
WLKPYALPMTEHVATIGYSGAGLVWNQDYLKTHQLPEPKQFSDLAKPVYFGHVTMSTPAR
SGTTQMMVESILAKYGWQKGWEILLRVGANLATASARSFGVSDYIANGQFAVGPTIDSYA
LILGRKLDYVQFVYDESFTLMPTYVAQIRQNHNDQYAKAFIELLMSSAVQTNMEGNDFAK
HSVQDQSLVNERFTRLPMGSIIRREECLNDLFDLAITKQLPQLKDTLLAVLEAKAQFARR
PSVLAKIEQIERTVFTMPISEQEVDALAIQIAPNSALSEEQQAESAMLLAEKGHEWQMRL
EKQLEQANQELKILLAEEAQ