Protein Info for CSW01_17540 in Vibrio cholerae E7946 ATCC 55056

Annotation: sodium:solute symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 513 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 44 to 67 (24 residues), see Phobius details amino acids 79 to 100 (22 residues), see Phobius details amino acids 121 to 148 (28 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details amino acids 183 to 200 (18 residues), see Phobius details amino acids 225 to 244 (20 residues), see Phobius details amino acids 264 to 289 (26 residues), see Phobius details amino acids 309 to 329 (21 residues), see Phobius details amino acids 364 to 382 (19 residues), see Phobius details amino acids 389 to 410 (22 residues), see Phobius details amino acids 418 to 436 (19 residues), see Phobius details amino acids 442 to 462 (21 residues), see Phobius details amino acids 487 to 508 (22 residues), see Phobius details TIGR00813: transporter, solute:sodium symporter (SSS) family" amino acids 34 to 426 (393 residues), 246.9 bits, see alignment E=2e-77 PF00474: SSF" amino acids 34 to 425 (392 residues), 175.6 bits, see alignment E=7.8e-56

Best Hits

KEGG orthology group: K03307, solute:Na+ symporter, SSS family (inferred from 100% identity to vch:VCA0667)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (513 amino acids)

>CSW01_17540 sodium:solute symporter (Vibrio cholerae E7946 ATCC 55056)
MVTYSTFIVIAIYLILTILISWFVNQRSIGNTDFSTGGRQFGWFTAGVSILATYISAMTF
IGMPGWVYQSGMEALNIHLNYPIVIFFAVVFFIPVFYRMGFTSIYEYLEHRFGVYARTIN
SVVFILVQCISSGVILYAIALILIQILPISIVEAIVYITLFTACYTYAGGISTVIWTDML
QSAVLIAGSVAIFVLLLLQVDGVHGVSREQLNIINLQFDLGVDTTLWAGVVAVSFLHMSV
YGTNQLIIQRTLATRCEKTAQKSMLLCGYGAFFIYFFFALLGVLLSIFYQERHFTNSNEV
ILDFVFHHTNPWVIGLIISALAAAAMSTLDSTYNSMATVATFDLYQRFIRRNAPDHHYQA
VARKMSLVAAGLVVIPALLAVSNESVLKTIASLTSIFVGIRLGSFVLGLFSNQANEKGVI
AGSIISIAAVLGARLMDIAWPWFAPIGTVFFLVSGVVISRYWGDNSIQQQAFIARQKHLF
ATPTMSQYGLLVFAAVTIAVCAIIPDWLYNALS