Protein Info for CSW01_17515 in Vibrio cholerae E7946 ATCC 55056

Annotation: beta-phosphoglucomutase family hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 212 TIGR02009: beta-phosphoglucomutase family hydrolase" amino acids 20 to 200 (181 residues), 183.9 bits, see alignment E=5.2e-58 PF00702: Hydrolase" amino acids 21 to 194 (174 residues), 92.1 bits, see alignment E=9.5e-30 PF13419: HAD_2" amino acids 24 to 200 (177 residues), 104.5 bits, see alignment E=1.2e-33 TIGR01509: HAD hydrolase, family IA, variant 3" amino acids 139 to 200 (62 residues), 51.3 bits, see alignment E=2.3e-17 PF13242: Hydrolase_like" amino acids 156 to 201 (46 residues), 29.2 bits, see alignment 1.1e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcm:VCM66_A0620)

Predicted SEED Role

"Putative phosphatase YqaB" in subsystem 2-phosphoglycolate salvage

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (212 amino acids)

>CSW01_17515 beta-phosphoglucomutase family hydrolase (Vibrio cholerae E7946 ATCC 55056)
MTNLLQKIGDAVTVVNFSLYEGFIFDMDGTLLDTMPAHLAAWEATAKHFDFPFDAQWLYG
LGGMPSAKITTHINKKLGLALDPDRVAAYKMDWFASMGLQAEVIPATYELLCQWQGKKKM
AIGTGSQRDSALRLLSNAQVLDKFDAVVTASDVQQHKPHPETFLMACEQLGLTPKQCLVF
EDTQLGLQAAHAGGMDCMLVTEQGLVFYPFAH