Protein Info for CSW01_17400 in Vibrio cholerae E7946 ATCC 55056

Annotation: AcrB/AcrD/AcrF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1067 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 363 to 381 (19 residues), see Phobius details amino acids 388 to 409 (22 residues), see Phobius details amino acids 415 to 438 (24 residues), see Phobius details amino acids 460 to 482 (23 residues), see Phobius details amino acids 493 to 515 (23 residues), see Phobius details amino acids 553 to 576 (24 residues), see Phobius details amino acids 910 to 926 (17 residues), see Phobius details amino acids 933 to 955 (23 residues), see Phobius details amino acids 961 to 984 (24 residues), see Phobius details amino acids 1006 to 1025 (20 residues), see Phobius details amino acids 1034 to 1059 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 32 to 1059 (1028 residues), 550.7 bits, see alignment E=6.4e-169 PF02355: SecD_SecF_C" amino acids 366 to 503 (138 residues), 22.7 bits, see alignment E=6e-09

Best Hits

KEGG orthology group: None (inferred from 66% identity to avr:B565_2748)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1067 amino acids)

>CSW01_17400 AcrB/AcrD/AcrF family protein (Vibrio cholerae E7946 ATCC 55056)
MMWSLHRPSQQKVNDMESRLGISGRIAAAFQNSAMTPLLALVGLLMGLFAVMVTPKEEEP
QIDVTFADVYIPFPGASPREVESLVTTPAEQVISEIEGIDKIYSFSQPDGAMIVAIFKVG
VPRNDAVVRIYNKLYSNKDWMPQGVGVGEPIIKPKGIEDVPIVTITLADKSDRFDQQQLT
QVAHGLETELKRIPGTRDIYTIGGQNTIVDVRLDPAKMNGFGITLDQLNQSLPAANQSSP
MLRLTHDNQEFPVQVGQFLTRVEEVKQLVVGLHNGTPVYLEDIATVSFGVNTATQNVWTG
DRDGIHPAVTIAVAKKGGENAVDVAKAVEARLVSLENQLIPQGIDVDITRDYGQTAADKS
NTLMGKLAFATTAVVILVLLTMGWRESIVVGMAIIVTLMITLFASWAWGFTLNRVSLFAL
IFSIGILVDDAIVVVENIHRHMAMGKRKLSELIPPAVDEVGGPTILATLTVIAALLPMAF
VSGLMGPYMSPIPINASMGMLISLAVAFVLSPWLAGKFLKAGHHQEEGKAANGIFHKIMS
PFVTAPKQGRNRLFLLLTILALIAGSVLLPVFQAVVLKMLPFDNKSEFQIVLDMPEGSSL
EKTQRVLFEMGATLNDVPEVRDYQIYAGTAAPINFNGLVRHYFMRNQAHQGDIQVNLLGR
KERDRDSHTIASQLRPQLNEIAQRFGGKVKVVEVPPGPPVWSPILAEVYGPTQEIRNEAA
RKVREIFRETKDIVDVDMYLPERHEKWQVVIDRSKAAHLQVPYASIVDALATAVGGKPIT
YLHSEHSKYPIPIQIQATETAKVRLEQVLNMKVGSPNGHAYPLSDLVEVRQTRMDDYIVH
KNLVPMVMVVGDMSGELDSPLYGMFEIGFALDEQMGLAQYYIHQPDGLSGVAVAWDGEWT
VTYETFRDMGIAYAVGMVLIYLLVVAQFKSYLVPLIIMAPIPLTIIGVMPGHALLGAQFT
ATSMIGMIALAGIIVRNSILLVDFINQQVEQGMAFSEAVIQSAAVRAKPIMLTALAAMIG
AVFILDDPIFNGLAISLIFGIFVSTVLTLLVIPVLYYVVMRKRFAAH