Protein Info for CSW01_16970 in Vibrio cholerae E7946 ATCC 55056

Annotation: alkylphosphonate utilization protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 PF08274: Zn_Ribbon_YjdM" amino acids 16 to 55 (40 residues), 31.1 bits, see alignment 1.9e-11 PF03831: YjdM" amino acids 126 to 191 (66 residues), 89.5 bits, see alignment E=1.1e-29

Best Hits

KEGG orthology group: K06193, phosphonoacetate hydrolase [EC: 3.11.1.2] (inferred from 99% identity to vco:VC0395_0481)

Predicted SEED Role

"Alkylphosphonate utilization operon protein PhnA" in subsystem Alkylphosphonate utilization

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.11.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (191 amino acids)

>CSW01_16970 alkylphosphonate utilization protein (Vibrio cholerae E7946 ATCC 55056)
MGTMSTEATLLERCQSQCELCAASTPLSPFVVAPHALVTVDHAVMLCDTCKGQIENPETV
DMNHWRCLNDSMWSQVQPVQVLAWRQLKRISETEGWARDLLDMMYLDEETAKWAEIGMDD
DAEKPRDVNGVELKKGDDVTVIKDLPVKGSSMVIKQGTAVRGIALTEDPKHIQGKVNGQT
MYIIAEYCRKK