Protein Info for CSW01_16875 in Vibrio cholerae E7946 ATCC 55056

Annotation: ribosome biogenesis GTPase YlqF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 TIGR03596: ribosome biogenesis GTP-binding protein YlqF" amino acids 6 to 275 (270 residues), 359.4 bits, see alignment E=1.2e-111 PF03193: RsgA_GTPase" amino acids 57 to 172 (116 residues), 30.7 bits, see alignment E=4.1e-11 PF01926: MMR_HSR1" amino acids 120 to 181 (62 residues), 56.5 bits, see alignment E=4.4e-19 PF02421: FeoB_N" amino acids 120 to 172 (53 residues), 30.1 bits, see alignment 5.1e-11

Best Hits

Swiss-Prot: 48% identical to RBGA_BACCR: Ribosome biogenesis GTPase A (rbgA) from Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711)

KEGG orthology group: K14540, ribosome biogenesis GTPase A (inferred from 100% identity to vch:VCA0528)

Predicted SEED Role

"50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)" in subsystem Conserved gene cluster associated with Met-tRNA formyltransferase or Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (314 amino acids)

>CSW01_16875 ribosome biogenesis GTPase YlqF (Vibrio cholerae E7946 ATCC 55056)
MVNNSIQWFPGHMHKARKEIEEAIPQVDVIIEVLDARIPFSSENPLISHIRGEKPCVKVL
NKRDLADPELTELWIAHLEQEKGVKAMAITTSNPQEVHKILELCRKLAPQREEIGKNIRT
MIMGIPNVGKSTIINTLAGRAIAQTGNQPAVTRRQQRINLQNGIVLSDTPGILWPKVENP
HSGFRLAATGAVKDTAMEYDEVAFYTVEYLAKHYPERLKERYQIDELPETDVELMEEIGR
KRGALRAGARVDLHKASEILLHELRQGVLGQITLERPEMITEELQQVEIDEALKAEEKAK
RKEERRKRYLRNKR