Protein Info for CSW01_15285 in Vibrio cholerae E7946 ATCC 55056

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 46 to 64 (19 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 95 to 118 (24 residues), see Phobius details amino acids 130 to 154 (25 residues), see Phobius details amino acids 160 to 178 (19 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 240 to 258 (19 residues), see Phobius details amino acids 270 to 289 (20 residues), see Phobius details amino acids 295 to 316 (22 residues), see Phobius details amino acids 326 to 347 (22 residues), see Phobius details amino acids 353 to 370 (18 residues), see Phobius details PF07690: MFS_1" amino acids 14 to 341 (328 residues), 141.2 bits, see alignment E=2.1e-45

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcj:VCD_001006)

Predicted SEED Role

"Multidrug resistance protein D"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (379 amino acids)

>CSW01_15285 MFS transporter (Vibrio cholerae E7946 ATCC 55056)
MKTKPSLWLMVIMLMFPQIVETIYSPVLGSIARSFSVSDAQAAQTLSVYFLAFALGVVIW
GVLADKWGRRPTMLVGLLIYGSATFIAMQTDSFTILMLARVFSAFGIAVGSVVTQTILRD
VFSGHELRKVFSLMGIGISISPVLGMLLGGQLAFAGGHQLVFLALFFIALVLFVYNLCQL
PETQQVKPKIALGCLVARMFKDRQVLLSALLVALYNVALFSYYQLGAFIFSDLGLDAEQF
GYSGIALGLGSLIGSFLNKTLLAKQVPQRALLLLAALLLIMGTIGVSLTLDSIGFVAAMI
LVVIAYGMAIPNILSTALVEYKSQAGSAGALFGLLYYLLIGSGLALTGLVQRLGVVLLMC
AGITLLATLARSSHIARLP