Protein Info for CSW01_15130 in Vibrio cholerae E7946 ATCC 55056

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 PF12833: HTH_18" amino acids 275 to 351 (77 residues), 75.7 bits, see alignment E=2.9e-25 PF00165: HTH_AraC" amino acids 319 to 351 (33 residues), 32.2 bits, see alignment 9.4e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_0997)

Predicted SEED Role

"Transcriptional regulator, VCA0231 ortholog" in subsystem Iron acquisition in Vibrio

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (358 amino acids)

>CSW01_15130 AraC family transcriptional regulator (Vibrio cholerae E7946 ATCC 55056)
MITIRIYVKLSSTNREVELIMQNRTSVMENTQNQHKVLTKNGARQTVTLSRHVVKERDEQ
IVAQNLNQPVMAQGHFVEYVSPNGFTLHGGSSLELADCDVMTTSAPALVIILLLEGTLRF
AYDDLKLELCANQHPQALMVNLEQPCIFHRRLHQGMTVRKLNIVLSPDTLQKFAQHSCPL
QHFLQQDKALVPLSLNEESWQAVESLLNRRVIHTISAHIAREATVWRLVHDAVLQCPKHA
TSLSQHQEGQSEQWINQLLHYIDQHLHEEICLEQLAERHAMSVSNLQRKFKTRLNMTIAH
YIRHRRLQLARQQLERGLVTITEAAYEAGYLHPSNFTAAFKKAFGISPQAFVELKQAG