Protein Info for CSW01_14655 in Vibrio cholerae E7946 ATCC 55056

Annotation: ribose ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 333 transmembrane" amino acids 34 to 53 (20 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 111 to 131 (21 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 179 to 202 (24 residues), see Phobius details amino acids 233 to 251 (19 residues), see Phobius details amino acids 262 to 280 (19 residues), see Phobius details amino acids 287 to 305 (19 residues), see Phobius details amino acids 311 to 328 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 57 to 325 (269 residues), 172.2 bits, see alignment E=6.6e-55

Best Hits

Swiss-Prot: 72% identical to RBSC_ECOLI: Ribose import permease protein RbsC (rbsC) from Escherichia coli (strain K12)

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 100% identity to vcm:VCM66_A0127)

MetaCyc: 72% identical to ribose ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-28-RXN

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (333 amino acids)

>CSW01_14655 ribose ABC transporter permease (Vibrio cholerae E7946 ATCC 55056)
MKQGYSMSTRTMTNTTSDNRKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLN
ILRQTSVNAIIAVGMTLVILTAGIDLSVGSVLALCGAFAATLVAMEVPVLVAVPTALLAG
AALGAISGIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTGY
TLGIPVPVWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICG
LLAALAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFL
NNALNLLDVSSYYQMIAKAVVILLAVLVDNKNK