Protein Info for CSW01_14580 in Vibrio cholerae E7946 ATCC 55056

Annotation: type VI secretion system lipoprotein TssJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 158 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details TIGR03352: type VI secretion lipoprotein, VC_A0113 family" amino acids 3 to 146 (144 residues), 153.6 bits, see alignment E=1.5e-49 PF12790: T6SS-SciN" amino acids 30 to 145 (116 residues), 104.2 bits, see alignment E=2e-34

Best Hits

KEGG orthology group: K11906, type VI secretion system protein VasD (inferred from 100% identity to vco:VC0395_0025)

Predicted SEED Role

"Type VI secretion lipoprotein/VasD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (158 amino acids)

>CSW01_14580 type VI secretion system lipoprotein TssJ (Vibrio cholerae E7946 ATCC 55056)
MNKVLWMLFALTVLTACSSSDKYEPAKEPTKVTFSLVSDEGVNPNIWGEASPIEIQVFEL
KDDSMFMSSDYDQIKTDYKKALRSNFVKNYDYVLTPGQFKFVNAFEVDEETNYIGVMAHF
AEPELSEWKKAVKVINKGREYHLLMLFKDYDVKLDRVE