Protein Info for CSW01_14560 in Vibrio cholerae E7946 ATCC 55056

Annotation: type VI secretion system baseplate subunit TssE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 TIGR03357: type VI secretion system lysozyme-like protein" amino acids 14 to 144 (131 residues), 134.5 bits, see alignment E=9.1e-44 PF04965: GPW_gp25" amino acids 38 to 124 (87 residues), 68.8 bits, see alignment E=1.4e-23

Best Hits

KEGG orthology group: K11905, type VI secretion system protein (inferred from 100% identity to vcj:VCD_000135)

Predicted SEED Role

"Uncharacterized protein similar to VCA0109"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (145 amino acids)

>CSW01_14560 type VI secretion system baseplate subunit TssE (Vibrio cholerae E7946 ATCC 55056)
MTYIAPEESAFGVGFFERLEANAKPMSLTRGPDAWDVLESIKRNVSNILNTRIGGAQSAP
HLGLVDFNDATLETLDLSVRIKLAIQQCLERYEPRLTRVLVRADQDSFNPLTLRFHITAT
INSEALHEKVQFSLLLDQSRKYRVF