Protein Info for CSW01_14445 in Vibrio cholerae E7946 ATCC 55056

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 41 to 62 (22 residues), see Phobius details amino acids 74 to 96 (23 residues), see Phobius details amino acids 102 to 120 (19 residues), see Phobius details amino acids 143 to 159 (17 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 217 to 240 (24 residues), see Phobius details amino acids 253 to 273 (21 residues), see Phobius details amino acids 282 to 299 (18 residues), see Phobius details amino acids 305 to 323 (19 residues), see Phobius details amino acids 344 to 364 (21 residues), see Phobius details amino acids 370 to 388 (19 residues), see Phobius details PF07690: MFS_1" amino acids 14 to 339 (326 residues), 54.5 bits, see alignment E=4.6e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_0055)

Predicted SEED Role

"Permease of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (400 amino acids)

>CSW01_14445 MFS transporter (Vibrio cholerae E7946 ATCC 55056)
MEKNNTTRAGYYLTGLFFDGISSGLFMMALPWMMLSTPNQGAFVAIVALVCTVLSFLLTP
FFSTLIDRSSRKQLLVLVQALQAGTAVVVALCYGVGYDSMGLLAAAQLVFWTSSNLAWSA
NNAFTQEHFQPHEYASISGKQEVIMQATTLGSGALGVVLLEMWGMFEFACFAALASGIAM
SSYLLAPYRRQLRQTHSASFFEQIKESREVFTLRPQFYAFLMLSTLTYPILTFLSKLVPI
WFAEMNISGDWFAGYNIAFGMGSLVTGLFVSRLLGISTHPKIIIGAMLLATMALIGMSLS
ASPQSLILCTFFFGTFNALNRIARTNWMHYSVNIDQRGRADGGLQMFSTLVQSVSYVAIA
FLSHFGLTQLGFMLAAMVMVAAVFMMVRLNGRMKLSAVLA