Protein Info for CSW01_14325 in Vibrio cholerae E7946 ATCC 55056

Annotation: peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF01476: LysM" amino acids 39 to 82 (44 residues), 32.5 bits, see alignment 1e-11 PF03734: YkuD" amino acids 95 to 229 (135 residues), 82.6 bits, see alignment E=7e-27 PF17969: Ldt_C" amino acids 233 to 296 (64 residues), 71.2 bits, see alignment E=1.5e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcm:VCM66_A0055)

Predicted SEED Role

"FIG01199739: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (306 amino acids)

>CSW01_14325 peptidase (Vibrio cholerae E7946 ATCC 55056)
MWWKVWVIGCALAVSWSINAAVFDLPIEGSSIVGNTQYHKVEKGETLADIAKKYDIGFLA
LMAANRGVDPFLPQEGFVISIPAKIILPKVAYEGIVINLAELRLYYFRPNEGKVHIFPVG
IGRIGRDTPVMQTSISSKRKYPTWTPPASIRKEYKAKGIDLPPVVPAGPENPLGDYAMRL
AYGSGEYLIHGTNKDFGVGMRVSAGCIRMDPKDIEWLYQQVERGEKVRIINEPIKVALEP
DRSVFIEVHEPLTRSNGVKKNLVVPEELSWWLQEHKISDAKARAAVLAQNGVPVEIAPPQ
WETIAQ