Protein Info for CSW01_14260 in Vibrio cholerae E7946 ATCC 55056

Annotation: cation tolerance protein CutA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 252 PF12945: PilZNR" amino acids 41 to 127 (87 residues), 43.1 bits, see alignment E=3.9e-15 PF07238: PilZ" amino acids 134 to 237 (104 residues), 53.6 bits, see alignment E=2.4e-18

Best Hits

Swiss-Prot: 100% identical to YCGRL_VIBCH: Cyclic di-GMP binding protein VCA0042 (VC_A0042) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: None (inferred from 100% identity to vcm:VCM66_A0041)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (252 amino acids)

>CSW01_14260 cation tolerance protein CutA (Vibrio cholerae E7946 ATCC 55056)
MNSRPAEKIDNNDGQTETPRSKTVSTINSTDALAMVEHSSELTLSITTPVGTKFVCRTPF
IGTHTDKFLLVEMPKISADDLQYFFQEGFWMNIRAISPRGEGALIHFRSQLMHILQEPVP
MAFLSIPNTMQVSQLRKEPRFELNLAGKVLFDEHRGDCELRDLSRSGCRFITPPLGKTYQ
VGDLVALEIFSDLRGTKTFPPLTGKICNLQRSLHHARYGLEFNEEGRNNAKNLLAQLKFN
GTKLTLNAEKKA