Protein Info for CSW01_14045 in Vibrio cholerae E7946 ATCC 55056

Annotation: ParA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 PF10609: ParA" amino acids 3 to 44 (42 residues), 31.6 bits, see alignment 4e-11 PF13614: AAA_31" amino acids 3 to 178 (176 residues), 218.6 bits, see alignment E=2.1e-68 PF06564: CBP_BcsQ" amino acids 4 to 246 (243 residues), 47.2 bits, see alignment E=7.5e-16 PF09140: MipZ" amino acids 4 to 156 (153 residues), 44.6 bits, see alignment E=4.2e-15 PF01656: CbiA" amino acids 5 to 228 (224 residues), 102 bits, see alignment E=8e-33 PF00142: Fer4_NifH" amino acids 10 to 252 (243 residues), 41.7 bits, see alignment E=3.5e-14 PF02374: ArsA_ATPase" amino acids 10 to 44 (35 residues), 25.6 bits, see alignment 2.5e-09

Best Hits

Swiss-Prot: 63% identical to Y002_PSEPK: Uncharacterized protein PP_0002 (PP_0002) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: K03496, chromosome partitioning protein (inferred from 100% identity to vcm:VCM66_2693)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (257 amino acids)

>CSW01_14045 ParA family protein (Vibrio cholerae E7946 ATCC 55056)
MGKIVAIANQKGGVGKTTTCINLAASMAATKRKVLVVDLDPQGNATMASGVDKYQVDSTA
YELLVEDAPFDQVVCRKTTGHYDLIAANGDVTAAEIKLMEVFAREVRLKNALASVRDNYD
FIFIDCPPSLNLLTINAMAAADSVLVPMQCEYFALEGLTALMDTISKLAAVVNDNLKIEG
ILRTMYDPRNRLANEVSDQLKKHFGSKVYRTVIPRNVRLAEAPSHGKPAMYYDKQSAGAK
AYLALAGEMLRREEIPA