Protein Info for CSW01_13160 in Vibrio cholerae E7946 ATCC 55056

Annotation: DUF3413 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 622 transmembrane" amino acids 22 to 44 (23 residues), see Phobius details amino acids 64 to 85 (22 residues), see Phobius details amino acids 92 to 112 (21 residues), see Phobius details amino acids 137 to 159 (23 residues), see Phobius details amino acids 171 to 192 (22 residues), see Phobius details PF11893: DUF3413" amino acids 16 to 254 (239 residues), 222.7 bits, see alignment E=6.6e-70 PF00884: Sulfatase" amino acids 262 to 537 (276 residues), 116.4 bits, see alignment E=2.5e-37

Best Hits

KEGG orthology group: K07014, (no description) (inferred from 100% identity to vch:VC2600)

Predicted SEED Role

"Predicted hydrolase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (622 amino acids)

>CSW01_13160 DUF3413 domain-containing protein (Vibrio cholerae E7946 ATCC 55056)
MLSNQSHLLRGFHMLLMIKKNIEWLFSHFILNAVLLAVLGLPYLQWMEVSSSNRVAYAYL
SATQFGWFGLFAFAITLVSLALVWLPSRLLHGVVFVASWAVSILLMVDIEVYQQYRFHLS
GFVWDLLLHGGQQVISVSWYTLAMAGFIVFVVGFAQWLIMKLAQRIQHSRGVRWVSAVWL
LSLLSSQFIHAWKDATYDSEIPSYSYHWPLYYPLTAKRFFDQLGVVDAQSARRQQVDFHA
PTSSTLNYPLRPLHIEPPAERPNILLIGIDAWRFDDANRDVTPNIAHFGQQATRFTHHLS
GGNSTQAGLFSLFYGLPATYWEEFQTSQTRPLLMQTLADLNYQFAIYGSAPLNSPPFDRT
IFSKIAQLRTVTPGENSPQRDERITEDFLHFLEQRDRSKPYFGFLFYDSAHAADFPSSMT
PPFTPYWERVDHIKLNNDFDPEPYHNRYRNALYYADSLIGKVLEQLQARDELRNTIVIIT
SDHGEEFNDNRQNYWGHGSNYSMAQIHVPLYIYIPDKEGSVLTHKTTHLDIAPMLMQEVL
GVQNPLNEFALGYPLWQESPQREWTIIGSYFNYALVSDKEMLVSYPTGRVETLNSELAPE
KERQISTQQIMQALEEMRQFLR