Protein Info for CSW01_13070 in Vibrio cholerae E7946 ATCC 55056

Annotation: 30S ribosomal protein S8

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 PF00410: Ribosomal_S8" amino acids 5 to 129 (125 residues), 162.9 bits, see alignment E=1.7e-52

Best Hits

Swiss-Prot: 100% identical to RS8_VIBC3: 30S ribosomal protein S8 (rpsH) from Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)

KEGG orthology group: K02994, small subunit ribosomal protein S8 (inferred from 100% identity to vco:VC0395_A2160)

MetaCyc: 80% identical to 30S ribosomal subunit protein S8 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S8p (S15Ae)" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (130 amino acids)

>CSW01_13070 30S ribosomal protein S8 (Vibrio cholerae E7946 ATCC 55056)
MSMQDPISDMLTRIRNGQAANKVAVKMPSSKLKVAIAALLKAEGYIADFAVEGEVKAELE
ITLKYFQAKPVIEQIKRVSRPGLRVYKKKDELPSVMGGLGVAVVSTSKGLMSDRAARKAG
LGGEIICYVA