Protein Info for CSW01_12935 in Vibrio cholerae E7946 ATCC 55056

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details amino acids 36 to 36 (1 residues), see Phobius details transmembrane" amino acids 35 to 35 (1 residues), see Phobius details amino acids 289 to 313 (25 residues), see Phobius details amino acids 333 to 364 (32 residues), see Phobius details amino acids 385 to 406 (22 residues), see Phobius details PF12704: MacB_PCD" amino acids 20 to 261 (242 residues), 51.4 bits, see alignment E=1.8e-17 PF02687: FtsX" amino acids 292 to 410 (119 residues), 62.5 bits, see alignment E=3.8e-21

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to vco:VC0395_A2132)

Predicted SEED Role

"ABC-type antimicrobial peptide transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (419 amino acids)

>CSW01_12935 ABC transporter permease (Vibrio cholerae E7946 ATCC 55056)
MKVILNLAWKSLLNRKATALLTVLTVAIAVVLLLGVERIRTQAKESFANTISGTDLIVGG
RSGQVNLLLYSVFRIGNATNNIDWKSYQEFSQHPAVKWAIPISLGDSHKGFRVLGTNHSY
FEHYRYGSKQPLTLSQGREFNGLFETVIGADVAQALGYQVGSQIIIAHGISDVGFSRHDN
LPFTVVGILAPTGTPVDKTVHVSLEAIEAIHVGWESGANLGHQPSAEQLAQRDFTPKQIT
AMLVGLKSKIQTFALQRQINDYPQEPLSAIMPGVALHELWGMMSVAEQALMAVSVFVVVA
GLLGMLSSLLTSLQERRREMSILRAMGARPQHVFALLVSEASVLTLVGILLGVSVLYLLL
ALAAPLIASQYGIQIALAGLTAYEWQLLGCVQLAGIVIGFIPALRAYRQSLSDGMTIRL