Protein Info for CSW01_12070 in Vibrio cholerae E7946 ATCC 55056

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 48 to 66 (19 residues), see Phobius details amino acids 77 to 95 (19 residues), see Phobius details amino acids 101 to 120 (20 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 157 to 176 (20 residues), see Phobius details amino acids 188 to 214 (27 residues), see Phobius details amino acids 230 to 248 (19 residues), see Phobius details PF01925: TauE" amino acids 11 to 246 (236 residues), 167.2 bits, see alignment E=2.6e-53

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 100% identity to vcj:VCD_001967)

Predicted SEED Role

"Putative membrane protein YfcA" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (261 amino acids)

>CSW01_12070 hypothetical protein (Vibrio cholerae E7946 ATCC 55056)
MELSLEVLGLLFLVAGVAGFIDAMAGGGGLLTLPALLAAGVPPTQALATNKLQSSFGSFS
ATLYFVRKGVVSLKAMRLAIACTFVGAALGAEAVQYIDATLLTSLIPLLLLGISLYFLLA
PTTKTHTGPAPLSETAFAFTVGFGIGFYDGFFGPGTGSIFTVCFVALGHFSLVEATARTK
VLNFTSNIAALTFFLIAGLPIWEIGLTMAVGGFIGARMGAKVVISKGQRWIRPLVITMSM
LMALKLLWEQHHAALLSMLGL