Protein Info for CSW01_11890 in Vibrio cholerae E7946 ATCC 55056

Annotation: SMP protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 166 to 184 (19 residues), see Phobius details PF10144: SMP_2" amino acids 6 to 152 (147 residues), 159.4 bits, see alignment E=3e-51

Best Hits

KEGG orthology group: K07186, membrane protein (inferred from 100% identity to vch:VC2346)

Predicted SEED Role

"Lipoate-protein ligase A" in subsystem Lipoic acid metabolism

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (207 amino acids)

>CSW01_11890 SMP protein (Vibrio cholerae E7946 ATCC 55056)
MDGSLFSFRVVVRVATVLAVAVMFFITIQNSVVISKGNERIQANQLETLTKVLITQAAMS
AGSMIADQDQERLLALTNQLATDRLVFDASIYDSEGVLLAASESALSVREVLGLDTPLHT
ASIGRQQLVEPVVHDGSLIGFVRITFETGKVTAISDHHYRKSDHNMYWMLLMSFVSGILL
TLLLQRRPKKPTGENLLLKQAEQSLND