Protein Info for CSW01_11620 in Vibrio cholerae E7946 ATCC 55056

Annotation: sodium-dependent transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 451 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 44 to 67 (24 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 114 to 138 (25 residues), see Phobius details amino acids 146 to 165 (20 residues), see Phobius details amino acids 176 to 197 (22 residues), see Phobius details amino acids 217 to 242 (26 residues), see Phobius details amino acids 254 to 278 (25 residues), see Phobius details amino acids 291 to 307 (17 residues), see Phobius details amino acids 313 to 337 (25 residues), see Phobius details amino acids 357 to 382 (26 residues), see Phobius details amino acids 388 to 405 (18 residues), see Phobius details amino acids 431 to 450 (20 residues), see Phobius details PF00209: SNF" amino acids 7 to 132 (126 residues), 78.9 bits, see alignment E=1.8e-26 amino acids 151 to 449 (299 residues), 95 bits, see alignment E=2.3e-31

Best Hits

KEGG orthology group: K03308, neurotransmitter:Na+ symporter, NSS family (inferred from 100% identity to vch:VC2283)

Predicted SEED Role

"Sodium-dependent transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (451 amino acids)

>CSW01_11620 sodium-dependent transporter (Vibrio cholerae E7946 ATCC 55056)
MAQSNSRETFSSRLGFILAAAGAAVGLGNIWGFPTQAASNGGGAFLLVYLILIFVVAFPM
LVVEMAIGRYGQANPVDSMRSLTSQPAAKKVGGFVGWVGLSVPSAVLAFYSIVGGWIICF
LLGAMTDLFGFTAASAWLKGFSVERNLFGTLIFYVLTILIVQGGVKQGIERWSTRLMPAL
FVLFAVLFIYIMTQQGAWEGLKHYLIPDFEKVWDRKLILAAMGQGFFSLTIGGCSMLIYG
SYLSKKENLPKMAMSVTLVDTAVAFIAGLVVLPAMFVAMNKGVQIYAQDGSLLSSDTLVF
TVLPLMFDSLGLLGQIFAMVFFLLLTIAALTSSISMLECPVALVGERFNTRRTPTSWVLG
GLIALFSVVIVYNFGALFGLVATLATQYLQPTAALMFCLFGGWVWQRDAKMKELQAGFPE
LQQSLFGKIWPWYVKFVCPVLVATVIWASFG