Protein Info for CSW01_11265 in Vibrio cholerae E7946 ATCC 55056

Annotation: flagellar basal-body protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 377 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF16548: FlgT_N" amino acids 24 to 110 (87 residues), 101.1 bits, see alignment E=6e-33 PF16539: FlgT_M" amino acids 114 to 256 (143 residues), 152.7 bits, see alignment E=1.4e-48 PF16538: FlgT_C" amino acids 300 to 375 (76 residues), 100 bits, see alignment E=1.3e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcm:VCM66_2131)

Predicted SEED Role

"Flagellar protein FlgT"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (377 amino acids)

>CSW01_11265 flagellar basal-body protein (Vibrio cholerae E7946 ATCC 55056)
MKKNILSIISALWMMLQLPSAHAAWYEVTGSAAIVSSEEVARLHALEDALYKAVNFAGAD
IGSISNLMPLLESDRREYLFANHEVRYILIEERKAINNVMYVRTRIDIYPSATACHVEQY
KKTMLIGNIDLASPQQAVMGQIYQVGDDFAQVINRRLEQESRSFVSVGTTQYDIDPKAPE
RIKMIAQDAGAQYIMGGMITDLTATIEQKTLQDDIINRQFAMEISVFDGKTGNEVMTRTY
REVARWPFPKTSQIDTRSARFWASTYGEMMLRVSRNIMLDLESEISCKITLPQIVAKFGT
TATMDLGRIHGVKQGDKLSLWHTGAFIDQQGLPRNKVTQSEITLTVSRVYEHEAELTVDQ
PELAYSIQIGDVMHKQM