Protein Info for CSW01_11205 in Vibrio cholerae E7946 ATCC 55056

Annotation: flagellar basal-body rod protein FlgF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details TIGR03506: flagellar hook-basal body protein" amino acids 4 to 121 (118 residues), 116.6 bits, see alignment E=2.1e-37 TIGR02490: flagellar basal-body rod protein FlgF" amino acids 6 to 226 (221 residues), 180.3 bits, see alignment E=4.1e-57 PF00460: Flg_bb_rod" amino acids 8 to 35 (28 residues), 24.4 bits, see alignment (E = 2.3e-09) PF06429: Flg_bbr_C" amino acids 173 to 243 (71 residues), 83.2 bits, see alignment E=1.1e-27

Best Hits

Swiss-Prot: 39% identical to FLGF_SALTY: Flagellar basal-body rod protein FlgF (flgF) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K02391, flagellar basal-body rod protein FlgF (inferred from 100% identity to vcj:VCD_002142)

Predicted SEED Role

"Flagellar basal-body rod protein FlgF" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (249 amino acids)

>CSW01_11205 flagellar basal-body rod protein FlgF (Vibrio cholerae E7946 ATCC 55056)
MDRALFLAMSGAKQNMQAMQLRANNLANVSTTGFRADLAQARSMQAYGEGLPSRVFSMTE
RPGHNFAQGSVITTGRDLDITIQGDGWISVLDKTGKEGLTRNGNLRIDETGLLLNGNGHP
VLGETGAPITLPVPLNKVEIGGDGTISVRPQGAPADAMEVVDRIKLVRLNDQSLFKDVNG
LFRATDPNTQFEADASVKILTGALEGSNVNAIGEMTSLIDLQRQFEMQVKMMSTAEEMDK
ASDSLLRSS