Protein Info for CSW01_10990 in Vibrio cholerae E7946 ATCC 55056

Annotation: phage tail tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 605 transmembrane" amino acids 337 to 359 (23 residues), see Phobius details amino acids 378 to 402 (25 residues), see Phobius details amino acids 415 to 440 (26 residues), see Phobius details amino acids 447 to 468 (22 residues), see Phobius details amino acids 480 to 498 (19 residues), see Phobius details TIGR01760: phage tail tape measure protein, TP901 family, core region" amino acids 49 to 387 (339 residues), 80.6 bits, see alignment E=5.5e-27 PF10145: PhageMin_Tail" amino acids 85 to 284 (200 residues), 110.4 bits, see alignment E=5.7e-36

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcj:VCD_002181)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (605 amino acids)

>CSW01_10990 phage tail tape measure protein (Vibrio cholerae E7946 ATCC 55056)
MDEKLMMVIGLVDQVTKPLAGITNEINGAMSAAEKGMEQAAKGGAGLWATGVAIQNALMP
AIEMDRKLGEVKSLGVTDEALKQLQQTALEFASDYGKSATEFVGASYDIQSAIAGLTGEE
LSQFTKASGVLAAATKADTATITSYMGTMYGIFKNQAEEMGKAAWVEDVAGMTASAVQMF
KTTGMEMSSAFTSVGANATAAGIAMSEQMAILGTLQSTMSGSEAGTKYKAFLAGVGGAQD
KLNLSFVDAQGKMLPMLDILEKLQGKFGDTLDVAESDELKKAFGSDEAVSLIKLLMADTQ
GLAASIDSLGQTKGMGKAEQMAAAMTDQSQRLEASWFAIRAAAFSMVLPAFNAVTGSIAD
GLMWLTSMTSEYPVLTEVLSYAAIGALSLGGVVASLSLVMGIAKMMAGGWAVTTAVLSGV
FKVLRISTIAMTAATWLFNAALWANPITWIIAGIVALVAAVGAMIYWWDEIKASFADTTW
FKIIAAAIDGVIEMLNMIPGINIEWRAGELPDVPVPETQPAIAKAVPVLPDVAALEASRP
SMDSTLIDYKRPENTPQLSKNMVNNLNSSESRTTNNVRQYGDVYITPQGGMTPEQLAEWD
ELNAG