Protein Info for CSW01_10710 in Vibrio cholerae E7946 ATCC 55056

Annotation: deferrochelatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 PF04261: Dyp_perox_N" amino acids 5 to 132 (128 residues), 117.2 bits, see alignment E=6.2e-38 TIGR01413: Dyp-type peroxidase family" amino acids 5 to 293 (289 residues), 299 bits, see alignment E=2.2e-93 PF20628: Dyp_perox_C" amino acids 135 to 292 (158 residues), 213.8 bits, see alignment E=1.3e-67

Best Hits

KEGG orthology group: K07223, putative iron-dependent peroxidase (inferred from 100% identity to vco:VC0395_A1729)

Predicted SEED Role

"Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>CSW01_10710 deferrochelatase (Vibrio cholerae E7946 ATCC 55056)
MFKSQTAILPEAGPFALYTLLKVRQNHAHVLQALKALPALVEEINQNQPGAELTVSVAFS
KGFWSHFEMASPPELIDFPELGEGETHAPSTDVDVLIHCHATRHDLLFYTLRKGISDIAQ
DIEIVDETYGFRYLDARDMTGFIDGTENPKAEKRAEVALVADGDFAGGSYVMVQRFVHNL
PAWNRLNLAAQEKVIGRTKPDSVELENVPAASHVGRVDIKEEGKGLKIVRHSLPYGSVSG
DHGLLFIAYCHTLHNFKTMLESMYGVTDGKTDQLLRFTKAVTGAYFFAPSQVMLQELTLK
NQ