Protein Info for CSW01_10615 in Vibrio cholerae E7946 ATCC 55056

Annotation: flagellar basal body-associated protein FliL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 167 transmembrane" amino acids 17 to 39 (23 residues), see Phobius details PF03748: FliL" amino acids 66 to 167 (102 residues), 79.3 bits, see alignment E=1.4e-26

Best Hits

KEGG orthology group: K02415, flagellar FliL protein (inferred from 100% identity to vco:VC0395_A1710)

Predicted SEED Role

"Flagellar biosynthesis protein FliL" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (167 amino acids)

>CSW01_10615 flagellar basal body-associated protein FliL (Vibrio cholerae E7946 ATCC 55056)
MAEEDLGTEAPKGKKKLLIIIIAAVVLLAGGGGAAFFMMGSGGDEAAADAEQKTEQVAAP
TDPVSYVNIAQPFVFNVTGDAKDRLVQIKVQLMVRGSENENLARYHSPLVESSLLATFAS
ATVEQLRTPNGRIELRDKATDDIKAALNQAVGKPVIEKVLFTDFVMQ