Protein Info for CSW01_10345 in Vibrio cholerae E7946 ATCC 55056

Annotation: flagellar biosynthesis protein FlhF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 TIGR03499: flagellar biosynthesis protein FlhF" amino acids 1 to 370 (370 residues), 293.8 bits, see alignment E=1.1e-91 PF00448: SRP54" amino acids 284 to 472 (189 residues), 131.7 bits, see alignment E=1.4e-42

Best Hits

KEGG orthology group: K02404, flagellar biosynthesis protein FlhF (inferred from 100% identity to vco:VC0395_A1656)

Predicted SEED Role

"Flagellar biosynthesis protein FlhF" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (495 amino acids)

>CSW01_10345 flagellar biosynthesis protein FlhF (Vibrio cholerae E7946 ATCC 55056)
MKIKRFFAKDMKTALLQVKEELGVDAVIMSNKKVAGGVEIVAAVDGDTAPAPAKRYNSQP
RHGYNQVSPSVAPTKSRELADDRVSLQSSADSGRSMTQRFANMLKQYSSADEQEHRAENE
DSLSALLKRQSENRAPQRNQTQRSQSSSERQRPDSPLGKLLQEDADARRKPRLDPTRYDR
KVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEVERREPLRAMLIKRLERMGVSL
EMADQLACYIPEETPPPKAWKALLGLVSDQIPVVKHDILKRGGVVALLGPTGVGKTTTVA
KLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNELADVIYQLRN
RRLILVDTAGMGQRDVRLSEQLDTLMQESGETIHSYLVLPATAQRKVLQETIEHFRRIPL
SGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPEDIVIAQPKYMVAKANELLEKS
TEDEPHYWTSDSERF