Protein Info for CSW01_10170 in Vibrio cholerae E7946 ATCC 55056

Annotation: MarC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 212 transmembrane" amino acids 6 to 32 (27 residues), see Phobius details amino acids 45 to 67 (23 residues), see Phobius details amino acids 77 to 95 (19 residues), see Phobius details amino acids 116 to 138 (23 residues), see Phobius details amino acids 148 to 166 (19 residues), see Phobius details amino acids 187 to 204 (18 residues), see Phobius details TIGR00427: membrane protein, MarC family" amino acids 6 to 204 (199 residues), 224.6 bits, see alignment E=5.1e-71 PF01914: MarC" amino acids 8 to 208 (201 residues), 220.8 bits, see alignment E=6.4e-70

Best Hits

Swiss-Prot: 62% identical to YCHE_ECOLI: UPF0056 membrane protein YhcE (ychE) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to vcm:VCM66_1959)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (212 amino acids)

>CSW01_10170 MarC family protein (Vibrio cholerae E7946 ATCC 55056)
MQSFEIAIFLQFFLGLVAAVNPVGIMPVFVSLTGHMTLEEKNKTAATANIAVAIILIIAL
LAGQMLLDLFSISLDSFRVAGGLLLLSIAFSMMSGKLGEDKQNKQEKSEYISREQIAVVP
LAMPLMAGPGAISSTIVYGSRYPNMLDTLGIILTVVAFSFCSWLLFRSAPYIVRLLGQTG
INVITRIMGLILGALGIEFIANGLRNLFPGLA