Protein Info for CSW01_10160 in Vibrio cholerae E7946 ATCC 55056

Annotation: EamA/RhaT family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 35 to 55 (21 residues), see Phobius details amino acids 67 to 86 (20 residues), see Phobius details amino acids 106 to 137 (32 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details amino acids 220 to 238 (19 residues), see Phobius details amino acids 249 to 267 (19 residues), see Phobius details amino acids 274 to 290 (17 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcj:VCD_002335)

Predicted SEED Role

"Permeases of the drug/metabolite transporter (DMT) superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (291 amino acids)

>CSW01_10160 EamA/RhaT family transporter (Vibrio cholerae E7946 ATCC 55056)
MTWIFLTLFAAFMQAWRNAFQSRLSGDVTTAGVTLARFLWASPIAGVYLIALYQWQPAAL
PTFSSAFWHYVVGASFMQILATALMVKLFKYNNYAVGAGLAKSEALVAAILGMLFFGTQL
TVLGWLGVVIGGVGVFMLSSHGGFKQLSLPTVLLGLSSGSAFALTSLWVREASLASQLPF
PYSAAWVLLLVISLQTLCLVGYLLIKERSTLYKLWQRPKLVMLTSVSSCLGSIGWFSAMS
LQAVPYVKTLGQVEIFFTMLISIFWLGQKVRIKDGFGLILVALAAILVMWT