Protein Info for CSW01_09745 in Vibrio cholerae E7946 ATCC 55056

Annotation: pvcA protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 608 PF05141: DIT1_PvcA" amino acids 39 to 290 (252 residues), 211.6 bits, see alignment E=1.6e-66 PF02668: TauD" amino acids 483 to 567 (85 residues), 32.1 bits, see alignment E=1.1e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_A1537)

Predicted SEED Role

"PvcA protein, related to known isonitrile synthases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (608 amino acids)

>CSW01_09745 pvcA protein (Vibrio cholerae E7946 ATCC 55056)
MLDAQQETYVEKISFILLNQLIAQCNASYNGLAHLKSQIRRFVNSQEKIKLLLPAFPCKT
NNLDKVLSHTPDLGEYVVLRKFVQCIRDIESVYEPGVTFYIFSDYHTFSDYISVDLDHHY
DYSDNLRKMVANMNCSDALKIVNFEHFDEFSDLKDTEYFDGLREKFGDPDYAENFTELKL
KNNKMNQTYLGLKKFMNQDQKFVLAPLSYKDRRRRLADIAKGMMVQGKALDNFLQQKFAD
CIRLSIHEHPMIGKKYSLFLFHERQFKTPWHSTLLFDASRGEFIIDSKENHLKRSGVILP
VTHDGKPWCYLQLSAADEVHAHALRQIRAELQHEKSGLYLECPANRASLDMLLPKELSQL
VKEFGSVLLRGFAPLADAEQLQTWYLNHRSAVTWAYEVSVQAFKGSAGEQPLHWELSCPP
AYMAVHPHRYQYEDYTPHEYAVYSVASPDSNTWTVVDAALAVLTINGQEREQLRNTIMHY
SNFSPEHGGNTLHPLVRYCSTSRQDVLRWQDFQHAQGYLTHLEGVSELTEQSRVYQRLNT
LCHDPRVCFEYRLQTGDLLLVNNLTTLQASHTSSMHNEYWSIHLQPDSINSPWQPHNRIV
EQAELTSA