Protein Info for CSW01_09455 in Vibrio cholerae E7946 ATCC 55056

Annotation: hemolysin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 691 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF13517: FG-GAP_3" amino acids 125 to 184 (60 residues), 29.2 bits, see alignment 2.3e-10 PF16458: Beta-prism_lec" amino acids 318 to 414 (97 residues), 77 bits, see alignment E=3.1e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_A1478)

Predicted SEED Role

"Hemolysin-related protein Vcp"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (691 amino acids)

>CSW01_09455 hemolysin (Vibrio cholerae E7946 ATCC 55056)
MKQTKTLTAISVLALSHLMTQSTAFASSSSDIQTKLKWSWSTSVFHPESNQVMAAPIVVQ
LNDDNGDGKIDEKDVADIIVVTFEGNKYANGGYIRALSGVDGSELWSYSNGGVIADARYA
PAAADLDGDGLIEIVSTSALTPYINILDHQGNIKKQLLKSASGWRSVGDIALADINGDGN
IEILAADGVYSYESGLLFSHDWAPSSIAFDSNGDGQREVFANGTLYQNNGAYLWQYQAND
TVWFSSVANLDGDDKPELVVSVPASLSTPENSEIAVLEHDGSVKWRVNNLSNPGGSVQAV
SSFLGKPSSSATTVDAQSAVYGYTDWAHQQRVLAENHQLAIRSGAVVDAIGANSQNMIGG
SGGSLSTIDTSKVRAIDVTYGKNKYTWKYGVLEMSFTLDNGAKVTVGSKDSAFTYLGLEW
KTKTVPYLGVEWRTKTVSYWFFGWHTKQVAYLAPVWKEKTIPYAVPVTLSKSTTVRYDIP
QGSQLLGMNVWSKEKHLFKHKQQVNAVQFLVGKVTADQSHMGIVYAGYYAVDMYDAQGNK
VWSVANDDLNSGKIGVSAYDFTGDGIDEVLVQDRLRMRILDGQTGRVMGIIANSSGTLWE
YPVVADLEGNNNASLIMVANDYDRESQVNHGVFVYESANPSKPWRNATRIWNQYAFNFSD
INANGTIPTNAQPSWLTHNSFRSATIRVPLK