Protein Info for CSW01_08835 in Vibrio cholerae E7946 ATCC 55056

Annotation: helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1149 PF00176: SNF2-rel_dom" amino acids 463 to 793 (331 residues), 157.3 bits, see alignment E=9.8e-50 PF04851: ResIII" amino acids 486 to 660 (175 residues), 24 bits, see alignment E=6.6e-09 PF00271: Helicase_C" amino acids 823 to 940 (118 residues), 37.2 bits, see alignment E=6.1e-13 PF04471: Mrr_cat" amino acids 1009 to 1125 (117 residues), 33.1 bits, see alignment E=1.1e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcm:VCM66_1699)

Predicted SEED Role

"helicase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1149 amino acids)

>CSW01_08835 helicase (Vibrio cholerae E7946 ATCC 55056)
MELTSLISKFFSSSDKTSQFELICDDSLDFATSRKTLEKIKAGKADEWITAQYVALKMLE
EQGDVSSFPDGFIMPADTAVRLDSELRDLFSLPPVWKGVIDADIQGKASTPTFKIDLSVT
TKQGRTTLNYTVDGPFIRFSQNEQYLLTPEQLMVFIAHKTHVRSDRSEYDNLLYLHSLQE
AQKNGCKLNLKHFERLRILTPNKITVEAELNSQGELILTPNMGQSASHESIQKVLGQLQS
DNAVTLKVGDEIVLFSEEKLMAVKEVISNRVIPQQQVKAFLENPTAYIDASLVDLDLGFS
IRVHGATVFKHAYFGETDESGIDWFGASPTSDLINPISKLTDRVRDKTTLEDVAKKIEDA
RQTGATVFDYEGQSYDISDPAAVEKVLNEIGHKISSPNTDLSSYGEAEDAETESEGSEIH
VVDIDLNDEELSENSPKVEQLISDISWDGELNWENHKRTPFPHQDIGVRWILGVEQKSLS
DSKVSGALLADDMGLGKTFMALSAIEHIYQRQQISGETKKPALIVAPLSLLENWKDEVDK
TFKHSPFKDVVILQSSAELNEYRMGGVEIRGQSASDDCLEPKYSLKVGKYFGPSRLDLPE
RLVITTYQTLRDYQFSMCLIDWGIVVFDEAQNIKNPNALQTRAAKGLKADFKLVATGTPV
ENSLADFWCLMDTACPGHLGSYQEFRARYISPILKAAGDEVEEIRARLGRELRIAVGALM
LRRIKEDNLKGLPLKHMYAGGEFENWKYLEELKSTMVGYQRDVYEGAISHQLENEESHAL
TTLMRLRDSSLHPRLSDGGRLDIPKNAKSARALYGESGKLVSLLETLDRVRSKQEKCIIF
AVNKRLQSFLSVTLGQIYNLGPLSVINGDAKAVAKRKSVPTRKSMISDFEAKEGFNLIVM
SPVAAGVGLTVVGANHVVHLERYWNPAKEAQATDRVYRIGQEKEVHIYIPLLHHPEFESF
DVNLHRLLTQKTLLKDAVVTPEDVIPQPAGVGGVVSGDLIDKRITAAELDKLSWQQFEAL
CVELLAKITDSESAWLTNNGADHGADGVLLNNSGNILLQAKFTQRQYDGYKGIQEIHSAK
PIYESAMRSSFGRLIFVTNSPLLAKRTHEIAATCGIEVLGRTQLLTYLEEYDITLKDILS
RLGKDRLRV