Protein Info for CSW01_08600 in Vibrio cholerae E7946 ATCC 55056

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 818 TIGR00229: PAS domain S-box protein" amino acids 127 to 236 (110 residues), 46.1 bits, see alignment E=2.6e-16 PF00989: PAS" amino acids 128 to 199 (72 residues), 32.6 bits, see alignment E=1.1e-11 PF13426: PAS_9" amino acids 137 to 235 (99 residues), 31.9 bits, see alignment E=2e-11 PF00563: EAL" amino acids 421 to 656 (236 residues), 217.7 bits, see alignment E=2.4e-68

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcj:VCD_002669)

Predicted SEED Role

"FIG01200621: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (818 amino acids)

>CSW01_08600 hypothetical protein (Vibrio cholerae E7946 ATCC 55056)
MSVNVSTVQPQSIGLKTRYAPLDWCYQLASQHMDYDIVMWQSLVGNSRSITKPDDFLEYL
PLTQREHAAGFFVQADLAPQSLNTLLVSAEKLVALVAFSVDEVSSQLVRGTITPLLIFHS
GMESAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHS
QHFYVDMWQQLREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQIFYIGFTTDLAPHL
DRVLDKQAGDVELLTQLPTLSKFSDQLKQRLPKQQTTTGFVLAIQPKFSSDKYYAQIRRL
AASLAQNRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQEAHQ
AVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKTLEK
WVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIAEDLGLINQ
LDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPTLAKNIT
VELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDREFVT
NIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKPLPLS
NLIHASDYRKHLKLTNRESDKQSREITTLQSLAIFTQYRLDPGDPLSLAVEYFNAVQSDV
LPVVTAGECVGLVDRAALNLHLTPTMGTELETAREAAIWRKPVNQIMRTPQVKLAHDTDL
KLLASLLKTNPPPPWVLVEGNKYKGIVTAPRLLAYLAS